This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 6 Casal2 model configurations (3 BetaDiff and 3 ADOL-C).
The CASAL model sensitivity 1 has a smaller minimisation tolerance value than the CASAL base model (1e-9 vs. 1e-6).
The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6).
The main characteristics of the Test Case HOK (hoki) CASAL model are:
Observation data include:
Parameters estimated include:
## [1] "Tue May 17 16:22:29 2022"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
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## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] Casal2_22.04 casal_2.30 devtools_2.4.3 usethis_2.1.5 rlist_0.4.6.2
## [6] ggthemes_4.2.4 gridExtra_2.3 coda_0.19-4 ggmcmc_1.5.1.1 ggplot2_3.3.6
## [11] tidyr_1.2.0 huxtable_5.4.0 dplyr_1.0.9 plyr_1.8.7
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## [1] Rcpp_1.0.8.3 lattice_0.20-38 prettyunits_1.1.1 ps_1.7.0
## [5] assertthat_0.2.1 rprojroot_2.0.3 digest_0.6.29 utf8_1.2.2
## [9] R6_2.5.1 evaluate_0.15 pillar_1.7.0 rlang_1.0.2
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## [37] magrittr_2.0.3 scales_1.2.0 cli_3.3.0 stringi_1.7.6
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## [45] bslib_0.3.1 ellipsis_0.3.2 generics_0.1.2 vctrs_0.4.1
## [49] RColorBrewer_1.1-3 tools_3.6.0 glue_1.6.2 purrr_0.3.4
## [53] processx_3.5.3 pkgload_1.2.4 fastmap_1.1.0 yaml_2.3.5
## [57] colorspace_2.0-3 sessioninfo_1.2.2 memoise_2.0.1 knitr_1.39
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source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')
Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results
| rownames | Base_Model | Sensitivity_1 | Percent_Diff |
|---|---|---|---|
| q[CSacous].q | 0.43120 | 0.43120 | 0.000 |
| q[WCacous].q | 0.30030 | 0.30020 | 0.033 |
| q[CRsum].q | 0.07431 | 0.07431 | 0.000 |
| q[SAsum].q | 0.05925 | 0.05925 | 0.000 |
| q[SAaut].q | 0.06717 | 0.06717 | 0.000 |
| relative_abundance[CRsumbio].cv_process_error | 0.14050 | 0.14050 | 0.000 |
| relative_abundance[SAsumbio].cv_process_error | 0.43060 | 0.43060 | 0.000 |
| log_B0_total | 14.34000 | 14.34000 | 0.000 |
| B0_prop_stock1 | 0.32870 | 0.32870 | 0.000 |
| natural_mortality.all | 0.29600 | 0.29600 | 0.000 |
| selectivity[Wspsl].shift_a | -0.21740 | -0.21740 | 0.000 |
| recruitment[E].YCS1 | 0.44780 | 0.44780 | 0.000 |
| recruitment[E].YCS2 | 0.72680 | 0.72680 | 0.000 |
| recruitment[E].YCS3 | 0.78450 | 0.78450 | 0.000 |
| recruitment[E].YCS4 | 1.36000 | 1.36000 | 0.000 |
| recruitment[E].YCS5 | 0.98770 | 0.98780 | -0.010 |
| recruitment[E].YCS6 | 0.32930 | 0.32930 | 0.000 |
| recruitment[E].YCS7 | 0.44720 | 0.44720 | 0.000 |
| recruitment[E].YCS8 | 0.26560 | 0.26560 | 0.000 |
| recruitment[E].YCS9 | 0.43420 | 0.43420 | 0.000 |
| recruitment[E].YCS10 | 0.48800 | 0.48800 | 0.000 |
| recruitment[E].YCS11 | 0.39570 | 0.39570 | 0.000 |
| recruitment[E].YCS12 | 0.21790 | 0.21790 | 0.000 |
| recruitment[E].YCS13 | 1.03600 | 1.03600 | 0.000 |
| recruitment[E].YCS14 | 0.95890 | 0.95890 | 0.000 |
| recruitment[E].YCS15 | 0.42900 | 0.42900 | 0.000 |
| recruitment[E].YCS16 | 0.13810 | 0.13810 | 0.000 |
| recruitment[E].YCS17 | 0.37500 | 0.37500 | 0.000 |
| recruitment[E].YCS18 | 0.39170 | 0.39160 | 0.026 |
| recruitment[E].YCS19 | 0.38310 | 0.38310 | 0.000 |
| recruitment[E].YCS20 | 0.56290 | 0.56290 | 0.000 |
| recruitment[E].YCS21 | 0.26400 | 0.26400 | 0.000 |
| recruitment[E].YCS22 | 0.28450 | 0.28450 | 0.000 |
| recruitment[E].YCS23 | 0.45000 | 0.45000 | 0.000 |
| recruitment[E].YCS24 | 0.25310 | 0.25310 | 0.000 |
| recruitment[E].YCS25 | 0.06000 | 0.06000 | 0.000 |
| recruitment[E].YCS26 | 0.46220 | 0.46220 | 0.000 |
| recruitment[E].YCS27 | 0.16160 | 0.16160 | 0.000 |
| recruitment[E].YCS28 | 0.26690 | 0.26690 | 0.000 |
| recruitment[E].YCS29 | 0.50040 | 0.50040 | 0.000 |
| recruitment[E].YCS30 | 0.52000 | 0.52000 | 0.000 |
| recruitment[E].YCS31 | 0.50880 | 0.50880 | 0.000 |
| recruitment[E].YCS32 | 0.60060 | 0.60060 | 0.000 |
| recruitment[E].YCS33 | 0.52210 | 0.52210 | 0.000 |
| recruitment[E].YCS34 | 0.37300 | 0.37300 | 0.000 |
| recruitment[E].YCS35 | 0.52680 | 0.52680 | 0.000 |
| recruitment[E].YCS36 | 0.15860 | 0.15860 | 0.000 |
| recruitment[E].YCS37 | 0.66060 | 0.66060 | 0.000 |
| recruitment[E].YCS38 | 0.15600 | 0.15600 | 0.000 |
| recruitment[E].YCS39 | 0.18580 | 0.18580 | 0.000 |
| recruitment[E].YCS40 | 0.73060 | 0.73060 | 0.000 |
| recruitment[E].YCS41 | 0.73910 | 0.73900 | 0.014 |
| recruitment[E].YCS42 | 1.19500 | 1.19500 | 0.000 |
| recruitment[W].YCS1 | 0.45700 | 0.45700 | 0.000 |
| recruitment[W].YCS2 | 0.82220 | 0.82220 | 0.000 |
| recruitment[W].YCS3 | 0.67000 | 0.67000 | 0.000 |
| recruitment[W].YCS4 | 0.65390 | 0.65390 | 0.000 |
| recruitment[W].YCS5 | 0.46590 | 0.46590 | 0.000 |
| recruitment[W].YCS6 | 0.51510 | 0.51510 | 0.000 |
| recruitment[W].YCS7 | 0.57820 | 0.57820 | 0.000 |
| recruitment[W].YCS8 | 0.47330 | 0.47330 | 0.000 |
| recruitment[W].YCS9 | 0.87190 | 0.87190 | 0.000 |
| recruitment[W].YCS10 | 0.83640 | 0.83650 | -0.012 |
| recruitment[W].YCS11 | 0.32020 | 0.32020 | 0.000 |
| recruitment[W].YCS12 | 0.16500 | 0.16500 | 0.000 |
| recruitment[W].YCS13 | 1.47600 | 1.47600 | 0.000 |
| recruitment[W].YCS14 | 0.77270 | 0.77280 | -0.013 |
| recruitment[W].YCS15 | 0.08135 | 0.08135 | 0.000 |
| recruitment[W].YCS16 | 0.08158 | 0.08158 | 0.000 |
| recruitment[W].YCS17 | 0.89280 | 0.89280 | 0.000 |
| recruitment[W].YCS18 | 1.26800 | 1.26800 | 0.000 |
| recruitment[W].YCS19 | 0.37720 | 0.37720 | 0.000 |
| recruitment[W].YCS20 | 0.95940 | 0.95940 | 0.000 |
| recruitment[W].YCS21 | 0.22110 | 0.22110 | 0.000 |
| recruitment[W].YCS22 | 0.19720 | 0.19720 | 0.000 |
| recruitment[W].YCS23 | 0.23790 | 0.23800 | -0.042 |
| recruitment[W].YCS24 | 0.20290 | 0.20290 | 0.000 |
| recruitment[W].YCS25 | 0.06000 | 0.06000 | 0.000 |
| recruitment[W].YCS26 | 0.37300 | 0.37300 | 0.000 |
| recruitment[W].YCS27 | 0.09548 | 0.09548 | 0.000 |
| recruitment[W].YCS28 | 0.79560 | 0.79560 | 0.000 |
| recruitment[W].YCS29 | 0.46520 | 0.46520 | 0.000 |
| recruitment[W].YCS30 | 0.51660 | 0.51660 | 0.000 |
| recruitment[W].YCS31 | 0.51130 | 0.51130 | 0.000 |
| recruitment[W].YCS32 | 0.75540 | 0.75540 | 0.000 |
| recruitment[W].YCS33 | 0.63890 | 0.63890 | 0.000 |
| recruitment[W].YCS34 | 0.61690 | 0.61690 | 0.000 |
| recruitment[W].YCS35 | 0.57840 | 0.57840 | 0.000 |
| recruitment[W].YCS36 | 0.14550 | 0.14550 | 0.000 |
| recruitment[W].YCS37 | 0.97480 | 0.97480 | 0.000 |
| recruitment[W].YCS38 | 0.16020 | 0.16020 | 0.000 |
| recruitment[W].YCS39 | 0.24440 | 0.24440 | 0.000 |
| recruitment[W].YCS40 | 2.19700 | 2.19700 | 0.000 |
| recruitment[W].YCS41 | 2.15200 | 2.15200 | 0.000 |
| recruitment[W].YCS42 | 1.19500 | 1.19500 | 0.000 |
| migration[Whome].rates_all1 | 0.32780 | 0.32780 | 0.000 |
| migration[Whome].rates_all2 | 0.30780 | 0.30780 | 0.000 |
| migration[Whome].rates_all3 | 0.47620 | 0.47620 | 0.000 |
| migration[Whome].rates_all4 | 0.14180 | 0.14180 | 0.000 |
| migration[Whome].rates_all5 | 0.46850 | 0.46840 | 0.021 |
| migration[Whome].rates_all6 | 0.74980 | 0.75030 | -0.067 |
| migration[Whome].rates_all7 | 0.79470 | 0.78840 | 0.793 |
| migration[Whome].rates_all8 | 1.00000 | 1.00000 | 0.000 |
| migration[Espmg].rates_all1 | 0.00566 | 0.00566 | 0.000 |
| migration[Espmg].rates_all2 | 0.16020 | 0.16020 | 0.000 |
| migration[Espmg].rates_all3 | 0.32410 | 0.32410 | 0.000 |
| migration[Espmg].rates_all4 | 0.43120 | 0.43120 | 0.000 |
| migration[Espmg].rates_all5 | 0.38550 | 0.38550 | 0.000 |
| migration[Espmg].rates_all6 | 0.46540 | 0.46530 | 0.021 |
| migration[Espmg].rates_all7 | 0.59900 | 0.59900 | 0.000 |
| migration[Espmg].rates_all8 | 0.60780 | 0.60780 | 0.000 |
| migration[Wspmg].rates_all1 | 0.10610 | 0.10610 | 0.000 |
| migration[Wspmg].rates_all2 | 0.28770 | 0.28770 | 0.000 |
| migration[Wspmg].rates_all3 | 0.27080 | 0.27080 | 0.000 |
| migration[Wspmg].rates_all4 | 0.45530 | 0.45530 | 0.000 |
| migration[Wspmg].rates_all5 | 0.48470 | 0.48470 | 0.000 |
| migration[Wspmg].rates_all6 | 0.52710 | 0.52710 | 0.000 |
| migration[Wspmg].rates_all7 | 0.66060 | 0.66060 | 0.000 |
| migration[Wspmg].rates_all8 | 0.59630 | 0.59630 | 0.000 |
| selectivity[Enspsl].all1 | 3.56700 | 3.56700 | 0.000 |
| selectivity[Enspsl].all2 | 1.22100 | 1.22100 | 0.000 |
| selectivity[Enspsl].all3 | 15.71000 | 15.71000 | 0.000 |
| selectivity[Wnspsl].all1 | 5.34100 | 5.34100 | 0.000 |
| selectivity[Wnspsl].all2 | 2.83900 | 2.83900 | 0.000 |
| selectivity[Wnspsl].all3 | 13.38000 | 13.38000 | 0.000 |
| selectivity[Espsl].all1 | 10.88000 | 10.88000 | 0.000 |
| selectivity[Espsl].all2 | 11.68000 | 11.68000 | 0.000 |
| selectivity[Espsl].all3 | 3.98200 | 3.98200 | 0.000 |
| selectivity[CRsl].all1 | 1.00000 | 1.00000 | 0.000 |
| selectivity[CRsl].all2 | 1.00000 | 1.00000 | 0.000 |
| selectivity[CRsl].all3 | 9.30000 | 9.30000 | 0.000 |
| selectivity[SAsl].all1 | 14.25000 | 14.25000 | 0.000 |
| selectivity[SAsl].all2 | 8.75500 | 8.75600 | -0.011 |
| selectivity[SAsl].all3 | 1.31500 | 1.31500 | 0.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| catchability[CSacous].q | 0.42724 | 0.42786 | 0.43116 | 0.42786 | 0.42786 | 0.43116 |
| catchability[WCacous].q | 0.31284 | 0.31244 | 0.30024 | 0.31244 | 0.31244 | 0.30024 |
| catchability[CRsum].q | 0.06832 | 0.06811 | 0.07431 | 0.06811 | 0.06811 | 0.07431 |
| catchability[SAsum].q | 0.06717 | 0.06706 | 0.05925 | 0.06706 | 0.06706 | 0.05925 |
| catchability[SAaut].q | 0.07578 | 0.07563 | 0.06717 | 0.07563 | 0.07563 | 0.06717 |
| observation[CRsumbio].process_error | 0.14094 | 0.14089 | 0.14048 | 0.14089 | 0.14089 | 0.14048 |
| observation[SAsumbio].process_error | 0.42364 | 0.42381 | 0.43061 | 0.42381 | 0.42381 | 0.43061 |
| parameter_transformation[log_sum_b0].log_total_parameter | 14.30470 | 14.30460 | 14.33950 | 14.30460 | 14.30460 | 14.33950 |
| parameter_transformation[log_sum_b0].total_proportion_parameter | 0.33622 | 0.33571 | 0.32871 | 0.33571 | 0.33571 | 0.32871 |
| process[Instant_mortality].m{west.sa} | 0.31271 | 0.31293 | 0.29598 | 0.31293 | 0.31293 | 0.29598 |
| time_varying[shifted_mu].a | -0.22921 | -0.22959 | -0.21744 | -0.22959 | -0.22959 | -0.21744 |
| process[recruit_E].ycs_values{1975} | 0.44537 | 0.44589 | 0.44782 | 0.44589 | 0.44589 | 0.44782 |
| process[recruit_E].ycs_values{1976} | 0.72939 | 0.73053 | 0.72680 | 0.73052 | 0.73052 | 0.72680 |
| process[recruit_E].ycs_values{1977} | 0.79231 | 0.79332 | 0.78454 | 0.79332 | 0.79332 | 0.78454 |
| process[recruit_E].ycs_values{1978} | 1.38645 | 1.38828 | 1.36001 | 1.38828 | 1.38827 | 1.36001 |
| process[recruit_E].ycs_values{1979} | 1.00265 | 1.00372 | 0.98776 | 1.00372 | 1.00372 | 0.98776 |
| process[recruit_E].ycs_values{1980} | 0.33437 | 0.33462 | 0.32932 | 0.33462 | 0.33462 | 0.32932 |
| process[recruit_E].ycs_values{1981} | 0.45502 | 0.45535 | 0.44723 | 0.45535 | 0.45535 | 0.44723 |
| process[recruit_E].ycs_values{1982} | 0.26974 | 0.26989 | 0.26556 | 0.26989 | 0.26989 | 0.26556 |
| process[recruit_E].ycs_values{1983} | 0.44106 | 0.44100 | 0.43418 | 0.44100 | 0.44100 | 0.43418 |
| process[recruit_E].ycs_values{1984} | 0.49412 | 0.49422 | 0.48804 | 0.49423 | 0.49422 | 0.48804 |
| process[recruit_E].ycs_values{1985} | 0.40010 | 0.40014 | 0.39570 | 0.40014 | 0.40014 | 0.39570 |
| process[recruit_E].ycs_values{1986} | 0.21978 | 0.21982 | 0.21791 | 0.21982 | 0.21982 | 0.21791 |
| process[recruit_E].ycs_values{1987} | 1.04131 | 1.04095 | 1.03640 | 1.04095 | 1.04095 | 1.03640 |
| process[recruit_E].ycs_values{1988} | 0.96345 | 0.96315 | 0.95891 | 0.96315 | 0.96315 | 0.95891 |
| process[recruit_E].ycs_values{1989} | 0.43095 | 0.43112 | 0.42899 | 0.43112 | 0.43112 | 0.42899 |
| process[recruit_E].ycs_values{1990} | 0.13797 | 0.13798 | 0.13810 | 0.13798 | 0.13798 | 0.13810 |
| process[recruit_E].ycs_values{1991} | 0.37385 | 0.37335 | 0.37500 | 0.37335 | 0.37335 | 0.37500 |
| process[recruit_E].ycs_values{1992} | 0.38858 | 0.38757 | 0.39164 | 0.38757 | 0.38757 | 0.39164 |
| process[recruit_E].ycs_values{1993} | 0.37995 | 0.37988 | 0.38310 | 0.37988 | 0.37988 | 0.38310 |
| process[recruit_E].ycs_values{1994} | 0.55794 | 0.55726 | 0.56285 | 0.55726 | 0.55726 | 0.56285 |
| process[recruit_E].ycs_values{1995} | 0.26178 | 0.26178 | 0.26399 | 0.26178 | 0.26178 | 0.26399 |
| process[recruit_E].ycs_values{1996} | 0.28251 | 0.28248 | 0.28447 | 0.28248 | 0.28248 | 0.28447 |
| process[recruit_E].ycs_values{1997} | 0.44781 | 0.44759 | 0.45003 | 0.44759 | 0.44759 | 0.45003 |
| process[recruit_E].ycs_values{1998} | 0.25264 | 0.25249 | 0.25307 | 0.25249 | 0.25249 | 0.25307 |
| process[recruit_E].ycs_values{1999} | 0.06000 | 0.06000 | 0.06000 | 0.06000 | 0.06000 | 0.06000 |
| process[recruit_E].ycs_values{2000} | 0.46013 | 0.45987 | 0.46220 | 0.45987 | 0.45987 | 0.46220 |
| process[recruit_E].ycs_values{2001} | 0.16086 | 0.16087 | 0.16165 | 0.16087 | 0.16087 | 0.16165 |
| process[recruit_E].ycs_values{2002} | 0.26611 | 0.26560 | 0.26689 | 0.26560 | 0.26560 | 0.26689 |
| process[recruit_E].ycs_values{2003} | 0.49959 | 0.49943 | 0.50038 | 0.49943 | 0.49943 | 0.50038 |
| process[recruit_E].ycs_values{2004} | 0.52053 | 0.52031 | 0.52003 | 0.52031 | 0.52031 | 0.52003 |
| process[recruit_E].ycs_values{2005} | 0.50764 | 0.50753 | 0.50882 | 0.50754 | 0.50754 | 0.50882 |
| process[recruit_E].ycs_values{2006} | 0.60013 | 0.59986 | 0.60055 | 0.59986 | 0.59986 | 0.60055 |
| process[recruit_E].ycs_values{2007} | 0.52087 | 0.52080 | 0.52215 | 0.52080 | 0.52080 | 0.52215 |
| process[recruit_E].ycs_values{2008} | 0.37115 | 0.37047 | 0.37300 | 0.37047 | 0.37047 | 0.37300 |
| process[recruit_E].ycs_values{2009} | 0.52790 | 0.52786 | 0.52681 | 0.52786 | 0.52786 | 0.52681 |
| process[recruit_E].ycs_values{2010} | 0.15695 | 0.15690 | 0.15864 | 0.15690 | 0.15690 | 0.15864 |
| process[recruit_E].ycs_values{2011} | 0.66047 | 0.66029 | 0.66058 | 0.66029 | 0.66029 | 0.66058 |
| process[recruit_E].ycs_values{2012} | 0.15554 | 0.15558 | 0.15600 | 0.15559 | 0.15558 | 0.15600 |
| process[recruit_E].ycs_values{2013} | 0.18518 | 0.18518 | 0.18584 | 0.18518 | 0.18518 | 0.18584 |
| process[recruit_E].ycs_values{2014} | 0.72844 | 0.72808 | 0.73062 | 0.72809 | 0.72808 | 0.73062 |
| process[recruit_E].ycs_values{2015} | 0.75587 | 0.75231 | 0.73900 | 0.75231 | 0.75231 | 0.73900 |
| process[recruit_E].ycs_values{2016} | 1.18886 | 1.18939 | 1.19515 | 1.18939 | 1.18939 | 1.19515 |
| process[recruit_W].ycs_values{1975} | 0.45869 | 0.45872 | 0.45702 | 0.45872 | 0.45872 | 0.45702 |
| process[recruit_W].ycs_values{1976} | 0.81422 | 0.81433 | 0.82218 | 0.81433 | 0.81433 | 0.82218 |
| process[recruit_W].ycs_values{1977} | 0.68515 | 0.68494 | 0.67000 | 0.68494 | 0.68494 | 0.67000 |
| process[recruit_W].ycs_values{1978} | 0.66937 | 0.66906 | 0.65390 | 0.66905 | 0.66905 | 0.65390 |
| process[recruit_W].ycs_values{1979} | 0.47307 | 0.47275 | 0.46590 | 0.47276 | 0.47276 | 0.46590 |
| process[recruit_W].ycs_values{1980} | 0.52064 | 0.52052 | 0.51512 | 0.52052 | 0.52052 | 0.51512 |
| process[recruit_W].ycs_values{1981} | 0.58344 | 0.58328 | 0.57824 | 0.58328 | 0.58328 | 0.57824 |
| process[recruit_W].ycs_values{1982} | 0.47462 | 0.47440 | 0.47328 | 0.47440 | 0.47440 | 0.47328 |
| process[recruit_W].ycs_values{1983} | 0.87309 | 0.87375 | 0.87192 | 0.87375 | 0.87375 | 0.87192 |
| process[recruit_W].ycs_values{1984} | 0.83633 | 0.83738 | 0.83646 | 0.83738 | 0.83738 | 0.83646 |
| process[recruit_W].ycs_values{1985} | 0.31942 | 0.31975 | 0.32024 | 0.31975 | 0.31975 | 0.32024 |
| process[recruit_W].ycs_values{1986} | 0.16493 | 0.16484 | 0.16497 | 0.16484 | 0.16484 | 0.16497 |
| process[recruit_W].ycs_values{1987} | 1.48007 | 1.48066 | 1.47555 | 1.48065 | 1.48066 | 1.47555 |
| process[recruit_W].ycs_values{1988} | 0.77454 | 0.77530 | 0.77276 | 0.77530 | 0.77530 | 0.77276 |
| process[recruit_W].ycs_values{1989} | 0.08148 | 0.08147 | 0.08134 | 0.08147 | 0.08147 | 0.08134 |
| process[recruit_W].ycs_values{1990} | 0.08183 | 0.08180 | 0.08158 | 0.08180 | 0.08180 | 0.08158 |
| process[recruit_W].ycs_values{1991} | 0.89197 | 0.89189 | 0.89280 | 0.89189 | 0.89189 | 0.89280 |
| process[recruit_W].ycs_values{1992} | 1.26758 | 1.26783 | 1.26778 | 1.26783 | 1.26783 | 1.26778 |
| process[recruit_W].ycs_values{1993} | 0.37652 | 0.37648 | 0.37722 | 0.37648 | 0.37648 | 0.37722 |
| process[recruit_W].ycs_values{1994} | 0.95579 | 0.95557 | 0.95939 | 0.95557 | 0.95557 | 0.95939 |
| process[recruit_W].ycs_values{1995} | 0.22027 | 0.22015 | 0.22113 | 0.22015 | 0.22015 | 0.22113 |
| process[recruit_W].ycs_values{1996} | 0.19632 | 0.19626 | 0.19718 | 0.19626 | 0.19626 | 0.19718 |
| process[recruit_W].ycs_values{1997} | 0.23643 | 0.23678 | 0.23795 | 0.23678 | 0.23678 | 0.23795 |
| process[recruit_W].ycs_values{1998} | 0.20041 | 0.20061 | 0.20292 | 0.20061 | 0.20061 | 0.20292 |
| process[recruit_W].ycs_values{1999} | 0.06000 | 0.06000 | 0.06000 | 0.06000 | 0.06000 | 0.06000 |
| process[recruit_W].ycs_values{2000} | 0.37089 | 0.37133 | 0.37304 | 0.37133 | 0.37133 | 0.37304 |
| process[recruit_W].ycs_values{2001} | 0.09506 | 0.09510 | 0.09548 | 0.09510 | 0.09510 | 0.09548 |
| process[recruit_W].ycs_values{2002} | 0.79553 | 0.79576 | 0.79558 | 0.79576 | 0.79576 | 0.79558 |
| process[recruit_W].ycs_values{2003} | 0.46570 | 0.46588 | 0.46517 | 0.46588 | 0.46588 | 0.46517 |
| process[recruit_W].ycs_values{2004} | 0.51761 | 0.51784 | 0.51662 | 0.51784 | 0.51784 | 0.51662 |
| process[recruit_W].ycs_values{2005} | 0.51305 | 0.51314 | 0.51126 | 0.51314 | 0.51314 | 0.51126 |
| process[recruit_W].ycs_values{2006} | 0.75475 | 0.75487 | 0.75544 | 0.75487 | 0.75487 | 0.75544 |
| process[recruit_W].ycs_values{2007} | 0.63692 | 0.63676 | 0.63891 | 0.63676 | 0.63676 | 0.63891 |
| process[recruit_W].ycs_values{2008} | 0.61564 | 0.61614 | 0.61686 | 0.61614 | 0.61614 | 0.61686 |
| process[recruit_W].ycs_values{2009} | 0.57305 | 0.57292 | 0.57841 | 0.57292 | 0.57292 | 0.57841 |
| process[recruit_W].ycs_values{2010} | 0.14618 | 0.14626 | 0.14547 | 0.14626 | 0.14626 | 0.14547 |
| process[recruit_W].ycs_values{2011} | 0.96708 | 0.96669 | 0.97478 | 0.96669 | 0.96669 | 0.97478 |
| process[recruit_W].ycs_values{2012} | 0.15909 | 0.15897 | 0.16016 | 0.15897 | 0.15897 | 0.16016 |
| process[recruit_W].ycs_values{2013} | 0.24402 | 0.24389 | 0.24444 | 0.24389 | 0.24389 | 0.24444 |
| process[recruit_W].ycs_values{2014} | 2.18651 | 2.18474 | 2.19657 | 2.18474 | 2.18474 | 2.19657 |
| process[recruit_W].ycs_values{2015} | 2.14758 | 2.14969 | 2.15204 | 2.14969 | 2.14969 | 2.15204 |
| process[recruit_W].ycs_values{2016} | 1.18909 | 1.18962 | 1.19539 | 1.18962 | 1.18962 | 1.19539 |
| selectivity[sel_Whome].v{1} | 0.32193 | 0.32136 | 0.32783 | 0.32136 | 0.32136 | 0.32783 |
| selectivity[sel_Whome].v{2} | 0.28491 | 0.28386 | 0.30778 | 0.28386 | 0.28386 | 0.30778 |
| selectivity[sel_Whome].v{3} | 0.45972 | 0.45775 | 0.47620 | 0.45775 | 0.45775 | 0.47620 |
| selectivity[sel_Whome].v{4} | 0.13549 | 0.13502 | 0.14184 | 0.13502 | 0.13502 | 0.14184 |
| selectivity[sel_Whome].v{5} | 0.43782 | 0.43169 | 0.46836 | 0.43169 | 0.43169 | 0.46836 |
| selectivity[sel_Whome].v{6} | 0.70822 | 0.71891 | 0.75026 | 0.71891 | 0.71891 | 0.75026 |
| selectivity[sel_Whome].v{7} | 0.99989 | 0.75958 | 0.78841 | 0.75964 | 0.75961 | 0.78841 |
| selectivity[sel_Espmg].v{1} | 0.00564 | 0.00564 | 0.00566 | 0.00564 | 0.00564 | 0.00566 |
| selectivity[sel_Espmg].v{2} | 0.15912 | 0.15901 | 0.16021 | 0.15901 | 0.15901 | 0.16021 |
| selectivity[sel_Espmg].v{3} | 0.32082 | 0.32056 | 0.32411 | 0.32056 | 0.32056 | 0.32411 |
| selectivity[sel_Espmg].v{4} | 0.42547 | 0.42513 | 0.43123 | 0.42513 | 0.42513 | 0.43123 |
| selectivity[sel_Espmg].v{5} | 0.37953 | 0.37927 | 0.38546 | 0.37927 | 0.37927 | 0.38546 |
| selectivity[sel_Espmg].v{6} | 0.45876 | 0.45847 | 0.46535 | 0.45848 | 0.45847 | 0.46535 |
| selectivity[sel_Espmg].v{7} | 0.59081 | 0.59044 | 0.59902 | 0.59044 | 0.59044 | 0.59902 |
| selectivity[sel_Espmg].v{8} | 0.61100 | 0.61064 | 0.60778 | 0.61064 | 0.61064 | 0.60778 |
| selectivity[sel_Wspmg].v{1} | 0.10556 | 0.10553 | 0.10614 | 0.10553 | 0.10553 | 0.10614 |
| selectivity[sel_Wspmg].v{2} | 0.29136 | 0.29139 | 0.28774 | 0.29139 | 0.29139 | 0.28774 |
| selectivity[sel_Wspmg].v{3} | 0.27068 | 0.27066 | 0.27076 | 0.27066 | 0.27066 | 0.27076 |
| selectivity[sel_Wspmg].v{4} | 0.45527 | 0.45520 | 0.45525 | 0.45520 | 0.45520 | 0.45525 |
| selectivity[sel_Wspmg].v{5} | 0.48421 | 0.48434 | 0.48466 | 0.48434 | 0.48434 | 0.48466 |
| selectivity[sel_Wspmg].v{6} | 0.52496 | 0.52398 | 0.52711 | 0.52398 | 0.52398 | 0.52711 |
| selectivity[sel_Wspmg].v{7} | 0.65298 | 0.65591 | 0.66062 | 0.65591 | 0.65591 | 0.66062 |
| selectivity[sel_Wspmg].v{8} | 0.60153 | 0.60101 | 0.59627 | 0.60101 | 0.60101 | 0.59627 |
| selectivity[Enspsl].mu | 3.57318 | 3.57227 | 3.56716 | 3.57227 | 3.57227 | 3.56716 |
| selectivity[Enspsl].sigma_l | 1.22245 | 1.22206 | 1.22108 | 1.22206 | 1.22206 | 1.22108 |
| selectivity[Enspsl].sigma_r | 50.00000 | 50.00000 | 15.71370 | 49.99990 | 50.00000 | 15.71370 |
| selectivity[Wnspsl].mu | 5.32840 | 5.32952 | 5.34117 | 5.32952 | 5.32952 | 5.34117 |
| selectivity[Wnspsl].sigma_l | 2.77815 | 2.77846 | 2.83934 | 2.77846 | 2.77846 | 2.83934 |
| selectivity[Wnspsl].sigma_r | 49.99970 | 49.99980 | 13.37890 | 49.99980 | 49.99940 | 13.37890 |
| selectivity[Espsl].mu | 11.25670 | 11.25470 | 10.87880 | 11.25470 | 11.25470 | 10.87880 |
| selectivity[Espsl].sigma_l | 10.86740 | 10.85940 | 11.67750 | 10.85940 | 10.85940 | 11.67750 |
| selectivity[Espsl].sigma_r | 4.02625 | 4.02912 | 3.98165 | 4.02912 | 4.02912 | 3.98165 |
| selectivity[CRsl].mu | 1.00000 | 1.00000 | 1.00000 | 1.00000 | 1.00000 | 1.00000 |
| selectivity[CRsl].sigma_l | 46.52220 | 46.52210 | 46.02310 | 46.52180 | 46.52220 | 46.02310 |
| selectivity[CRsl].sigma_r | 10.09280 | 10.08780 | 9.30042 | 10.08780 | 10.08780 | 9.30042 |
| selectivity[SAsl].mu | 14.86850 | 14.86480 | 14.25230 | 14.86480 | 14.86480 | 14.25230 |
| selectivity[SAsl].sigma_l | 8.69468 | 8.69281 | 8.75558 | 8.69281 | 8.69281 | 8.75558 |
| selectivity[SAsl].sigma_r | 1.00000 | 1.00000 | 1.31519 | 1.00000 | 1.00000 | 1.31519 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| catchability[CSacous].q | 0.000 | -0.145 | -0.918 | -0.145 | -0.145 | -0.918 |
| catchability[WCacous].q | 0.000 | 0.128 | 4.027 | 0.128 | 0.128 | 4.027 |
| catchability[CRsum].q | 0.000 | 0.298 | -8.765 | 0.298 | 0.298 | -8.765 |
| catchability[SAsum].q | 0.000 | 0.171 | 11.797 | 0.172 | 0.172 | 11.797 |
| catchability[SAaut].q | 0.000 | 0.188 | 11.363 | 0.188 | 0.188 | 11.363 |
| observation[CRsumbio].process_error | 0.000 | 0.035 | 0.328 | 0.035 | 0.035 | 0.328 |
| observation[SAsumbio].process_error | 0.000 | -0.040 | -1.645 | -0.040 | -0.040 | -1.645 |
| parameter_transformation[log_sum_b0].log_total_parameter | 0.000 | 0.001 | -0.243 | 0.001 | 0.001 | -0.243 |
| parameter_transformation[log_sum_b0].total_proportion_parameter | 0.000 | 0.151 | 2.234 | 0.151 | 0.151 | 2.234 |
| process[Instant_mortality].m{west.sa} | 0.000 | -0.071 | 5.349 | -0.070 | -0.070 | 5.349 |
| time_varying[shifted_mu].a | 0.000 | -0.166 | 5.135 | -0.166 | -0.166 | 5.135 |
| process[recruit_E].ycs_values{1975} | 0.000 | -0.117 | -0.549 | -0.117 | -0.117 | -0.549 |
| process[recruit_E].ycs_values{1976} | 0.000 | -0.156 | 0.355 | -0.155 | -0.155 | 0.355 |
| process[recruit_E].ycs_values{1977} | 0.000 | -0.127 | 0.981 | -0.128 | -0.128 | 0.981 |
| process[recruit_E].ycs_values{1978} | 0.000 | -0.132 | 1.907 | -0.132 | -0.131 | 1.907 |
| process[recruit_E].ycs_values{1979} | 0.000 | -0.107 | 1.485 | -0.107 | -0.107 | 1.485 |
| process[recruit_E].ycs_values{1980} | 0.000 | -0.073 | 1.512 | -0.074 | -0.073 | 1.512 |
| process[recruit_E].ycs_values{1981} | 0.000 | -0.072 | 1.712 | -0.072 | -0.072 | 1.712 |
| process[recruit_E].ycs_values{1982} | 0.000 | -0.055 | 1.551 | -0.055 | -0.055 | 1.551 |
| process[recruit_E].ycs_values{1983} | 0.000 | 0.013 | 1.559 | 0.013 | 0.013 | 1.559 |
| process[recruit_E].ycs_values{1984} | 0.000 | -0.022 | 1.229 | -0.022 | -0.022 | 1.229 |
| process[recruit_E].ycs_values{1985} | 0.000 | -0.009 | 1.102 | -0.009 | -0.009 | 1.102 |
| process[recruit_E].ycs_values{1986} | 0.000 | -0.022 | 0.850 | -0.022 | -0.022 | 0.850 |
| process[recruit_E].ycs_values{1987} | 0.000 | 0.035 | 0.472 | 0.035 | 0.035 | 0.472 |
| process[recruit_E].ycs_values{1988} | 0.000 | 0.032 | 0.471 | 0.031 | 0.032 | 0.471 |
| process[recruit_E].ycs_values{1989} | 0.000 | -0.040 | 0.455 | -0.040 | -0.040 | 0.455 |
| process[recruit_E].ycs_values{1990} | 0.000 | -0.009 | -0.101 | -0.009 | -0.009 | -0.101 |
| process[recruit_E].ycs_values{1991} | 0.000 | 0.135 | -0.307 | 0.135 | 0.135 | -0.307 |
| process[recruit_E].ycs_values{1992} | 0.000 | 0.260 | -0.787 | 0.260 | 0.260 | -0.787 |
| process[recruit_E].ycs_values{1993} | 0.000 | 0.017 | -0.831 | 0.016 | 0.016 | -0.831 |
| process[recruit_E].ycs_values{1994} | 0.000 | 0.123 | -0.879 | 0.123 | 0.123 | -0.879 |
| process[recruit_E].ycs_values{1995} | 0.000 | -0.001 | -0.843 | -0.002 | -0.002 | -0.843 |
| process[recruit_E].ycs_values{1996} | 0.000 | 0.008 | -0.695 | 0.008 | 0.008 | -0.695 |
| process[recruit_E].ycs_values{1997} | 0.000 | 0.049 | -0.496 | 0.049 | 0.049 | -0.496 |
| process[recruit_E].ycs_values{1998} | 0.000 | 0.061 | -0.170 | 0.061 | 0.061 | -0.170 |
| process[recruit_E].ycs_values{1999} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| process[recruit_E].ycs_values{2000} | 0.000 | 0.057 | -0.449 | 0.057 | 0.057 | -0.449 |
| process[recruit_E].ycs_values{2001} | 0.000 | -0.007 | -0.489 | -0.007 | -0.007 | -0.489 |
| process[recruit_E].ycs_values{2002} | 0.000 | 0.191 | -0.294 | 0.191 | 0.191 | -0.294 |
| process[recruit_E].ycs_values{2003} | 0.000 | 0.031 | -0.159 | 0.031 | 0.031 | -0.159 |
| process[recruit_E].ycs_values{2004} | 0.000 | 0.043 | 0.096 | 0.043 | 0.043 | 0.096 |
| process[recruit_E].ycs_values{2005} | 0.000 | 0.021 | -0.233 | 0.021 | 0.021 | -0.233 |
| process[recruit_E].ycs_values{2006} | 0.000 | 0.046 | -0.070 | 0.046 | 0.046 | -0.070 |
| process[recruit_E].ycs_values{2007} | 0.000 | 0.014 | -0.245 | 0.014 | 0.014 | -0.245 |
| process[recruit_E].ycs_values{2008} | 0.000 | 0.184 | -0.500 | 0.184 | 0.184 | -0.500 |
| process[recruit_E].ycs_values{2009} | 0.000 | 0.007 | 0.206 | 0.007 | 0.007 | 0.206 |
| process[recruit_E].ycs_values{2010} | 0.000 | 0.032 | -1.074 | 0.032 | 0.032 | -1.074 |
| process[recruit_E].ycs_values{2011} | 0.000 | 0.028 | -0.017 | 0.028 | 0.028 | -0.017 |
| process[recruit_E].ycs_values{2012} | 0.000 | -0.030 | -0.294 | -0.031 | -0.030 | -0.294 |
| process[recruit_E].ycs_values{2013} | 0.000 | 0.002 | -0.355 | 0.002 | 0.002 | -0.355 |
| process[recruit_E].ycs_values{2014} | 0.000 | 0.050 | -0.299 | 0.049 | 0.049 | -0.299 |
| process[recruit_E].ycs_values{2015} | 0.000 | 0.471 | 2.231 | 0.471 | 0.471 | 2.231 |
| process[recruit_E].ycs_values{2016} | 0.000 | -0.045 | -0.529 | -0.045 | -0.045 | -0.529 |
| process[recruit_W].ycs_values{1975} | 0.000 | -0.005 | 0.365 | -0.005 | -0.005 | 0.365 |
| process[recruit_W].ycs_values{1976} | 0.000 | -0.014 | -0.977 | -0.014 | -0.014 | -0.977 |
| process[recruit_W].ycs_values{1977} | 0.000 | 0.031 | 2.210 | 0.030 | 0.030 | 2.210 |
| process[recruit_W].ycs_values{1978} | 0.000 | 0.048 | 2.312 | 0.048 | 0.048 | 2.312 |
| process[recruit_W].ycs_values{1979} | 0.000 | 0.068 | 1.517 | 0.067 | 0.067 | 1.517 |
| process[recruit_W].ycs_values{1980} | 0.000 | 0.023 | 1.061 | 0.024 | 0.023 | 1.061 |
| process[recruit_W].ycs_values{1981} | 0.000 | 0.027 | 0.892 | 0.027 | 0.027 | 0.892 |
| process[recruit_W].ycs_values{1982} | 0.000 | 0.047 | 0.284 | 0.048 | 0.047 | 0.284 |
| process[recruit_W].ycs_values{1983} | 0.000 | -0.076 | 0.134 | -0.076 | -0.076 | 0.134 |
| process[recruit_W].ycs_values{1984} | 0.000 | -0.125 | -0.016 | -0.125 | -0.125 | -0.016 |
| process[recruit_W].ycs_values{1985} | 0.000 | -0.104 | -0.257 | -0.103 | -0.103 | -0.257 |
| process[recruit_W].ycs_values{1986} | 0.000 | 0.055 | -0.021 | 0.055 | 0.055 | -0.021 |
| process[recruit_W].ycs_values{1987} | 0.000 | -0.040 | 0.305 | -0.039 | -0.040 | 0.305 |
| process[recruit_W].ycs_values{1988} | 0.000 | -0.099 | 0.229 | -0.098 | -0.099 | 0.229 |
| process[recruit_W].ycs_values{1989} | 0.000 | 0.003 | 0.160 | 0.003 | 0.003 | 0.160 |
| process[recruit_W].ycs_values{1990} | 0.000 | 0.037 | 0.304 | 0.037 | 0.037 | 0.304 |
| process[recruit_W].ycs_values{1991} | 0.000 | 0.009 | -0.093 | 0.009 | 0.009 | -0.093 |
| process[recruit_W].ycs_values{1992} | 0.000 | -0.020 | -0.016 | -0.020 | -0.020 | -0.016 |
| process[recruit_W].ycs_values{1993} | 0.000 | 0.011 | -0.185 | 0.011 | 0.011 | -0.185 |
| process[recruit_W].ycs_values{1994} | 0.000 | 0.023 | -0.377 | 0.023 | 0.023 | -0.377 |
| process[recruit_W].ycs_values{1995} | 0.000 | 0.054 | -0.391 | 0.054 | 0.054 | -0.391 |
| process[recruit_W].ycs_values{1996} | 0.000 | 0.028 | -0.440 | 0.028 | 0.028 | -0.440 |
| process[recruit_W].ycs_values{1997} | 0.000 | -0.147 | -0.643 | -0.147 | -0.147 | -0.643 |
| process[recruit_W].ycs_values{1998} | 0.000 | -0.099 | -1.251 | -0.099 | -0.099 | -1.251 |
| process[recruit_W].ycs_values{1999} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| process[recruit_W].ycs_values{2000} | 0.000 | -0.118 | -0.580 | -0.117 | -0.117 | -0.580 |
| process[recruit_W].ycs_values{2001} | 0.000 | -0.037 | -0.446 | -0.037 | -0.037 | -0.446 |
| process[recruit_W].ycs_values{2002} | 0.000 | -0.029 | -0.007 | -0.029 | -0.029 | -0.007 |
| process[recruit_W].ycs_values{2003} | 0.000 | -0.039 | 0.114 | -0.039 | -0.039 | 0.114 |
| process[recruit_W].ycs_values{2004} | 0.000 | -0.044 | 0.191 | -0.045 | -0.045 | 0.191 |
| process[recruit_W].ycs_values{2005} | 0.000 | -0.017 | 0.350 | -0.016 | -0.017 | 0.350 |
| process[recruit_W].ycs_values{2006} | 0.000 | -0.015 | -0.091 | -0.015 | -0.015 | -0.091 |
| process[recruit_W].ycs_values{2007} | 0.000 | 0.026 | -0.312 | 0.026 | 0.026 | -0.312 |
| process[recruit_W].ycs_values{2008} | 0.000 | -0.080 | -0.198 | -0.080 | -0.080 | -0.198 |
| process[recruit_W].ycs_values{2009} | 0.000 | 0.024 | -0.934 | 0.024 | 0.024 | -0.934 |
| process[recruit_W].ycs_values{2010} | 0.000 | -0.056 | 0.483 | -0.055 | -0.055 | 0.483 |
| process[recruit_W].ycs_values{2011} | 0.000 | 0.041 | -0.796 | 0.041 | 0.041 | -0.796 |
| process[recruit_W].ycs_values{2012} | 0.000 | 0.075 | -0.674 | 0.075 | 0.075 | -0.674 |
| process[recruit_W].ycs_values{2013} | 0.000 | 0.052 | -0.172 | 0.052 | 0.052 | -0.172 |
| process[recruit_W].ycs_values{2014} | 0.000 | 0.081 | -0.460 | 0.081 | 0.081 | -0.460 |
| process[recruit_W].ycs_values{2015} | 0.000 | -0.098 | -0.208 | -0.098 | -0.098 | -0.208 |
| process[recruit_W].ycs_values{2016} | 0.000 | -0.045 | -0.530 | -0.045 | -0.045 | -0.530 |
| selectivity[sel_Whome].v{1} | 0.000 | 0.177 | -1.833 | 0.177 | 0.177 | -1.833 |
| selectivity[sel_Whome].v{2} | 0.000 | 0.370 | -8.027 | 0.370 | 0.370 | -8.027 |
| selectivity[sel_Whome].v{3} | 0.000 | 0.430 | -3.584 | 0.429 | 0.429 | -3.584 |
| selectivity[sel_Whome].v{4} | 0.000 | 0.346 | -4.687 | 0.344 | 0.344 | -4.687 |
| selectivity[sel_Whome].v{5} | 0.000 | 1.401 | -6.975 | 1.400 | 1.400 | -6.975 |
| selectivity[sel_Whome].v{6} | 0.000 | -1.510 | -5.937 | -1.510 | -1.510 | -5.937 |
| selectivity[sel_Whome].v{7} | 0.000 | 24.034 | 21.150 | 24.028 | 24.031 | 21.150 |
| selectivity[sel_Espmg].v{1} | 0.000 | 0.080 | -0.332 | 0.080 | 0.080 | -0.332 |
| selectivity[sel_Espmg].v{2} | 0.000 | 0.073 | -0.683 | 0.073 | 0.073 | -0.683 |
| selectivity[sel_Espmg].v{3} | 0.000 | 0.078 | -1.028 | 0.078 | 0.078 | -1.028 |
| selectivity[sel_Espmg].v{4} | 0.000 | 0.079 | -1.354 | 0.079 | 0.079 | -1.354 |
| selectivity[sel_Espmg].v{5} | 0.000 | 0.069 | -1.563 | 0.069 | 0.069 | -1.563 |
| selectivity[sel_Espmg].v{6} | 0.000 | 0.063 | -1.436 | 0.063 | 0.063 | -1.436 |
| selectivity[sel_Espmg].v{7} | 0.000 | 0.062 | -1.389 | 0.062 | 0.062 | -1.389 |
| selectivity[sel_Espmg].v{8} | 0.000 | 0.060 | 0.528 | 0.060 | 0.060 | 0.528 |
| selectivity[sel_Wspmg].v{1} | 0.000 | 0.033 | -0.552 | 0.033 | 0.033 | -0.552 |
| selectivity[sel_Wspmg].v{2} | 0.000 | -0.010 | 1.242 | -0.010 | -0.010 | 1.242 |
| selectivity[sel_Wspmg].v{3} | 0.000 | 0.008 | -0.029 | 0.008 | 0.008 | -0.029 |
| selectivity[sel_Wspmg].v{4} | 0.000 | 0.017 | 0.004 | 0.017 | 0.017 | 0.004 |
| selectivity[sel_Wspmg].v{5} | 0.000 | -0.026 | -0.092 | -0.026 | -0.026 | -0.092 |
| selectivity[sel_Wspmg].v{6} | 0.000 | 0.187 | -0.409 | 0.187 | 0.187 | -0.409 |
| selectivity[sel_Wspmg].v{7} | 0.000 | -0.449 | -1.171 | -0.449 | -0.449 | -1.171 |
| selectivity[sel_Wspmg].v{8} | 0.000 | 0.087 | 0.875 | 0.087 | 0.087 | 0.875 |
| selectivity[Enspsl].mu | 0.000 | 0.025 | 0.168 | 0.025 | 0.025 | 0.168 |
| selectivity[Enspsl].sigma_l | 0.000 | 0.032 | 0.112 | 0.032 | 0.032 | 0.112 |
| selectivity[Enspsl].sigma_r | 0.000 | 0.000 | 68.573 | 0.000 | 0.000 | 68.573 |
| selectivity[Wnspsl].mu | 0.000 | -0.021 | -0.240 | -0.021 | -0.021 | -0.240 |
| selectivity[Wnspsl].sigma_l | 0.000 | -0.011 | -2.203 | -0.011 | -0.011 | -2.203 |
| selectivity[Wnspsl].sigma_r | 0.000 | -0.000 | 73.242 | -0.000 | 0.001 | 73.242 |
| selectivity[Espsl].mu | 0.000 | 0.018 | 3.357 | 0.018 | 0.018 | 3.357 |
| selectivity[Espsl].sigma_l | 0.000 | 0.074 | -7.454 | 0.074 | 0.074 | -7.454 |
| selectivity[Espsl].sigma_r | 0.000 | -0.071 | 1.108 | -0.071 | -0.071 | 1.108 |
| selectivity[CRsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| selectivity[CRsl].sigma_l | 0.000 | 0.000 | 1.073 | 0.001 | 0.000 | 1.073 |
| selectivity[CRsl].sigma_r | 0.000 | 0.050 | 7.851 | 0.050 | 0.050 | 7.851 |
| selectivity[SAsl].mu | 0.000 | 0.025 | 4.144 | 0.025 | 0.025 | 4.144 |
| selectivity[SAsl].sigma_l | 0.000 | 0.022 | -0.700 | 0.022 | 0.022 | -0.700 |
| selectivity[SAsl].sigma_r | 0.000 | 0.000 | -31.519 | 0.000 | 0.000 | -31.519 |
| Component | Base_Model | Sensitivity_1 |
|---|---|---|
| CRsumbio | -31.030 | -31.030 |
| CSacous | -9.835 | -9.836 |
| SAautbio | -3.984 | -3.984 |
| SAsumbio | -6.146 | -6.146 |
| WCacous | -5.916 | -5.916 |
| CRsumage | 323.800 | 323.800 |
| SAautage | 35.120 | 35.120 |
| SAsumage | 221.100 | 221.100 |
| EnspOLF | 24.280 | 24.280 |
| Enspage | 256.100 | 256.100 |
| Espage | 581.500 | 581.500 |
| WnspOLF | 70.250 | 70.250 |
| Wnspage | 157.000 | 157.000 |
| Wspage | 364.800 | 364.800 |
| pspawn | -13.130 | -13.130 |
| pspawn_1993 | -6.015 | -6.015 |
| prior_on_q[CSacous].q | -0.839 | -0.839 |
| prior_on_q[WCacous].q | -1.202 | -1.202 |
| prior_on_q[CRsum].q | -2.207 | -2.207 |
| prior_on_q[SAsum].q | -1.557 | -1.557 |
| prior_on_q[SAaut].q | -1.762 | -1.762 |
| prior_on_relative_abundance[CRsumbio].cv_process_error | 0.000 | 0.000 |
| prior_on_relative_abundance[SAsumbio].cv_process_error | 0.000 | 0.000 |
| prior_on_log_B0_total | 0.000 | 0.000 |
| prior_on_B0_prop_stock1 | 12.560 | 12.560 |
| prior_on_natural_mortality.all | -1.217 | -1.217 |
| prior_on_selectivity[Wspsl].shift_a | 0.378 | 0.378 |
| prior_on_recruitment[E].YCS | -13.750 | -13.750 |
| prior_on_recruitment[W].YCS | -1.785 | -1.785 |
| prior_on_migration[Whome].rates_all | 0.000 | 0.000 |
| prior_on_migration[Espmg].rates_all | 0.000 | 0.000 |
| prior_on_migration[Wspmg].rates_all | 0.000 | 0.000 |
| prior_on_selectivity[Enspsl].all | 0.000 | 0.000 |
| prior_on_selectivity[Wnspsl].all | 0.000 | 0.000 |
| prior_on_selectivity[Espsl].all | 0.000 | 0.000 |
| prior_on_selectivity[CRsl].all | 0.000 | 0.000 |
| prior_on_selectivity[SAsl].all | 0.000 | 0.000 |
| Umax_Ensp1 | 0.000 | 0.000 |
| Umax_Ensp2 | 0.000 | 0.000 |
| Umax_Wnsp1 | 0.000 | 0.000 |
| Umax_Wnsp2 | 0.000 | 0.000 |
| Umax_Esp | 0.000 | 0.000 |
| Umax_Wsp | 0.000 | 0.000 |
| YCS.eq.16 | 0.000 | 0.000 |
| sp.migr | 0.013 | 0.013 |
| Total | 1947.000 | 1947.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| observation->CSacousbio->1991 | 2.342 | 2.344 | 2.404 | 2.344 | 2.344 | 2.404 |
| observation->CSacousbio->1993 | -0.577 | -0.577 | -0.588 | -0.577 | -0.577 | -0.588 |
| observation->CSacousbio->1994 | -0.016 | -0.016 | -0.030 | -0.016 | -0.016 | -0.030 |
| observation->CSacousbio->1995 | -0.562 | -0.562 | -0.567 | -0.562 | -0.562 | -0.567 |
| observation->CSacousbio->1996 | -0.027 | -0.027 | 0.013 | -0.027 | -0.027 | 0.013 |
| observation->CSacousbio->1997 | -0.912 | -0.912 | -0.899 | -0.912 | -0.912 | -0.899 |
| observation->CSacousbio->1998 | -0.054 | -0.055 | -0.004 | -0.055 | -0.055 | -0.004 |
| observation->CSacousbio->1999 | -1.025 | -1.025 | -1.012 | -1.025 | -1.025 | -1.012 |
| observation->CSacousbio->2001 | -1.217 | -1.217 | -1.211 | -1.217 | -1.217 | -1.211 |
| observation->CSacousbio->2002 | -0.297 | -0.297 | -0.338 | -0.297 | -0.297 | -0.338 |
| observation->CSacousbio->2003 | -0.845 | -0.845 | -0.863 | -0.845 | -0.845 | -0.863 |
| observation->CSacousbio->2005 | -0.929 | -0.929 | -0.927 | -0.929 | -0.929 | -0.927 |
| observation->CSacousbio->2006 | -0.939 | -0.939 | -0.950 | -0.939 | -0.939 | -0.950 |
| observation->CSacousbio->2007 | -0.623 | -0.623 | -0.600 | -0.623 | -0.623 | -0.600 |
| observation->CSacousbio->2008 | -1.094 | -1.094 | -1.125 | -1.094 | -1.094 | -1.125 |
| observation->CSacousbio->2009 | -0.185 | -0.186 | -0.110 | -0.186 | -0.186 | -0.110 |
| observation->CSacousbio->2011 | -1.021 | -1.021 | -1.000 | -1.021 | -1.021 | -1.000 |
| observation->CSacousbio->2013 | -0.892 | -0.892 | -0.855 | -0.892 | -0.892 | -0.855 |
| observation->CSacousbio->2015 | -0.190 | -0.191 | -0.150 | -0.191 | -0.191 | -0.150 |
| observation->CSacousbio->2017 | -1.020 | -1.020 | -1.021 | -1.020 | -1.020 | -1.021 |
| observation->WCacousbio->1988 | -0.588 | -0.588 | -0.588 | -0.588 | -0.588 | -0.588 |
| observation->WCacousbio->1989 | -0.183 | -0.184 | -0.168 | -0.184 | -0.184 | -0.168 |
| observation->WCacousbio->1990 | -0.332 | -0.331 | -0.327 | -0.331 | -0.331 | -0.327 |
| observation->WCacousbio->1991 | -0.425 | -0.425 | -0.425 | -0.425 | -0.425 | -0.425 |
| observation->WCacousbio->1992 | -0.744 | -0.744 | -0.744 | -0.744 | -0.744 | -0.744 |
| observation->WCacousbio->1993 | -0.369 | -0.371 | -0.374 | -0.371 | -0.371 | -0.374 |
| observation->WCacousbio->1997 | -0.054 | -0.055 | -0.043 | -0.055 | -0.055 | -0.043 |
| observation->WCacousbio->2000 | -1.265 | -1.264 | -1.272 | -1.264 | -1.264 | -1.272 |
| observation->WCacousbio->2012 | -0.906 | -0.906 | -0.896 | -0.906 | -0.906 | -0.896 |
| observation->WCacousbio->2013 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 |
| observation->CRsumbio->1992 | -1.634 | -1.634 | -1.647 | -1.634 | -1.634 | -1.647 |
| observation->CRsumbio->1993 | 0.040 | 0.041 | 0.043 | 0.041 | 0.041 | 0.043 |
| observation->CRsumbio->1994 | -1.760 | -1.761 | -1.760 | -1.761 | -1.761 | -1.760 |
| observation->CRsumbio->1995 | -1.425 | -1.431 | -1.406 | -1.431 | -1.431 | -1.406 |
| observation->CRsumbio->1996 | -1.690 | -1.691 | -1.699 | -1.691 | -1.691 | -1.699 |
| observation->CRsumbio->1997 | -0.607 | -0.609 | -0.635 | -0.609 | -0.609 | -0.635 |
| observation->CRsumbio->1998 | -1.203 | -1.205 | -1.210 | -1.205 | -1.205 | -1.210 |
| observation->CRsumbio->1999 | -0.953 | -0.950 | -0.919 | -0.950 | -0.950 | -0.919 |
| observation->CRsumbio->2000 | -1.629 | -1.629 | -1.632 | -1.629 | -1.629 | -1.632 |
| observation->CRsumbio->2001 | -1.773 | -1.773 | -1.775 | -1.773 | -1.773 | -1.775 |
| observation->CRsumbio->2002 | -1.209 | -1.205 | -1.206 | -1.205 | -1.205 | -1.206 |
| observation->CRsumbio->2003 | -1.749 | -1.748 | -1.744 | -1.748 | -1.748 | -1.744 |
| observation->CRsumbio->2004 | -0.818 | -0.821 | -0.803 | -0.821 | -0.821 | -0.803 |
| observation->CRsumbio->2005 | -1.471 | -1.470 | -1.477 | -1.470 | -1.470 | -1.477 |
| observation->CRsumbio->2006 | -1.314 | -1.314 | -1.306 | -1.314 | -1.314 | -1.306 |
| observation->CRsumbio->2007 | -0.727 | -0.726 | -0.756 | -0.726 | -0.726 | -0.756 |
| observation->CRsumbio->2008 | -0.373 | -0.376 | -0.402 | -0.376 | -0.376 | -0.402 |
| observation->CRsumbio->2009 | -0.586 | -0.587 | -0.559 | -0.587 | -0.587 | -0.559 |
| observation->CRsumbio->2010 | -1.349 | -1.350 | -1.359 | -1.350 | -1.350 | -1.359 |
| observation->CRsumbio->2011 | -1.096 | -1.094 | -1.105 | -1.094 | -1.094 | -1.105 |
| observation->CRsumbio->2012 | -1.439 | -1.438 | -1.448 | -1.438 | -1.438 | -1.448 |
| observation->CRsumbio->2013 | -1.494 | -1.494 | -1.491 | -1.494 | -1.494 | -1.491 |
| observation->CRsumbio->2014 | -1.768 | -1.768 | -1.770 | -1.768 | -1.768 | -1.770 |
| observation->CRsumbio->2016 | -1.410 | -1.411 | -1.411 | -1.411 | -1.411 | -1.411 |
| observation->CRsumbio->2018 | -1.552 | -1.552 | -1.554 | -1.552 | -1.552 | -1.554 |
| observation->SAsumbio->1992 | -0.597 | -0.596 | -0.588 | -0.596 | -0.596 | -0.588 |
| observation->SAsumbio->1993 | -0.314 | -0.314 | -0.309 | -0.314 | -0.314 | -0.309 |
| observation->SAsumbio->1994 | 0.196 | 0.194 | 0.186 | 0.194 | 0.194 | 0.186 |
| observation->SAsumbio->2001 | -0.835 | -0.834 | -0.822 | -0.834 | -0.834 | -0.822 |
| observation->SAsumbio->2002 | -0.794 | -0.794 | -0.777 | -0.794 | -0.794 | -0.777 |
| observation->SAsumbio->2003 | -0.837 | -0.836 | -0.825 | -0.836 | -0.836 | -0.825 |
| observation->SAsumbio->2004 | 0.732 | 0.735 | 0.734 | 0.735 | 0.735 | 0.734 |
| observation->SAsumbio->2005 | -0.258 | -0.255 | -0.218 | -0.255 | -0.255 | -0.218 |
| observation->SAsumbio->2006 | -0.600 | -0.598 | -0.558 | -0.598 | -0.598 | -0.558 |
| observation->SAsumbio->2007 | 0.636 | 0.637 | 0.654 | 0.637 | 0.637 | 0.654 |
| observation->SAsumbio->2008 | -0.461 | -0.463 | -0.462 | -0.463 | -0.463 | -0.462 |
| observation->SAsumbio->2009 | -0.585 | -0.584 | -0.583 | -0.584 | -0.584 | -0.583 |
| observation->SAsumbio->2010 | -0.143 | -0.146 | -0.147 | -0.146 | -0.146 | -0.147 |
| observation->SAsumbio->2012 | -0.848 | -0.848 | -0.835 | -0.848 | -0.848 | -0.835 |
| observation->SAsumbio->2013 | -0.797 | -0.796 | -0.786 | -0.796 | -0.796 | -0.786 |
| observation->SAsumbio->2015 | -0.200 | -0.201 | -0.189 | -0.201 | -0.201 | -0.189 |
| observation->SAsumbio->2017 | -0.638 | -0.638 | -0.620 | -0.638 | -0.638 | -0.620 |
| observation->SAautbio->1992 | -1.459 | -1.460 | -1.450 | -1.460 | -1.460 | -1.450 |
| observation->SAautbio->1996 | -1.233 | -1.232 | -1.250 | -1.232 | -1.232 | -1.250 |
| observation->SAautbio->1998 | -1.308 | -1.306 | -1.284 | -1.306 | -1.306 | -1.284 |
| observation->Espage->1988 | 19.793 | 19.790 | 19.640 | 19.790 | 19.790 | 19.640 |
| observation->Espage->1989 | 15.858 | 15.857 | 15.862 | 15.857 | 15.857 | 15.862 |
| observation->Espage->1990 | 21.488 | 21.486 | 21.446 | 21.486 | 21.486 | 21.446 |
| observation->Espage->1991 | 20.641 | 20.640 | 20.612 | 20.640 | 20.640 | 20.612 |
| observation->Espage->1992 | 24.089 | 24.092 | 24.020 | 24.092 | 24.092 | 24.020 |
| observation->Espage->1993 | 19.305 | 19.304 | 19.328 | 19.304 | 19.304 | 19.328 |
| observation->Espage->1994 | 20.528 | 20.522 | 20.503 | 20.522 | 20.522 | 20.503 |
| observation->Espage->1995 | 22.541 | 22.530 | 22.559 | 22.530 | 22.530 | 22.559 |
| observation->Espage->1996 | 18.590 | 18.590 | 18.577 | 18.590 | 18.590 | 18.577 |
| observation->Espage->1997 | 20.974 | 20.978 | 20.964 | 20.978 | 20.978 | 20.964 |
| observation->Espage->1998 | 20.587 | 20.579 | 20.611 | 20.579 | 20.579 | 20.611 |
| observation->Espage->1999 | 22.886 | 22.875 | 22.862 | 22.875 | 22.875 | 22.862 |
| observation->Espage->2000 | 23.321 | 23.321 | 23.314 | 23.321 | 23.321 | 23.314 |
| observation->Espage->2001 | 20.735 | 20.735 | 20.773 | 20.735 | 20.735 | 20.773 |
| observation->Espage->2002 | 26.248 | 26.243 | 26.287 | 26.243 | 26.243 | 26.287 |
| observation->Espage->2003 | 19.120 | 19.118 | 19.120 | 19.118 | 19.118 | 19.120 |
| observation->Espage->2004 | 22.692 | 22.698 | 22.642 | 22.698 | 22.698 | 22.642 |
| observation->Espage->2005 | 26.122 | 26.120 | 26.070 | 26.120 | 26.120 | 26.070 |
| observation->Espage->2006 | 23.242 | 23.245 | 23.149 | 23.245 | 23.245 | 23.149 |
| observation->Espage->2007 | 25.274 | 25.277 | 25.210 | 25.277 | 25.277 | 25.210 |
| observation->Espage->2008 | 22.167 | 22.166 | 22.129 | 22.166 | 22.166 | 22.129 |
| observation->Espage->2009 | 18.691 | 18.691 | 18.690 | 18.691 | 18.691 | 18.690 |
| observation->Espage->2010 | 21.855 | 21.856 | 21.851 | 21.856 | 21.856 | 21.851 |
| observation->Espage->2014 | 20.616 | 20.614 | 20.648 | 20.614 | 20.614 | 20.648 |
| observation->Espage->2015 | 21.823 | 21.820 | 21.870 | 21.820 | 21.820 | 21.870 |
| observation->Espage->2016 | 21.204 | 21.203 | 21.204 | 21.203 | 21.203 | 21.204 |
| observation->Espage->2017 | 21.575 | 21.578 | 21.563 | 21.578 | 21.578 | 21.563 |
| observation->Wspage->1988 | 15.724 | 15.729 | 15.753 | 15.729 | 15.729 | 15.753 |
| observation->Wspage->1989 | 11.555 | 11.558 | 11.566 | 11.558 | 11.558 | 11.566 |
| observation->Wspage->1990 | 11.752 | 11.750 | 11.790 | 11.750 | 11.750 | 11.790 |
| observation->Wspage->1991 | 13.036 | 13.037 | 13.051 | 13.037 | 13.037 | 13.051 |
| observation->Wspage->1992 | 10.178 | 10.179 | 10.170 | 10.179 | 10.179 | 10.170 |
| observation->Wspage->1993 | 10.569 | 10.571 | 10.579 | 10.571 | 10.571 | 10.579 |
| observation->Wspage->1994 | 9.918 | 9.918 | 9.924 | 9.918 | 9.918 | 9.924 |
| observation->Wspage->1995 | 13.403 | 13.399 | 13.396 | 13.399 | 13.399 | 13.396 |
| observation->Wspage->1996 | 11.840 | 11.841 | 11.844 | 11.841 | 11.841 | 11.844 |
| observation->Wspage->1997 | 11.230 | 11.233 | 11.243 | 11.233 | 11.233 | 11.243 |
| observation->Wspage->1998 | 11.761 | 11.761 | 11.762 | 11.761 | 11.761 | 11.762 |
| observation->Wspage->1999 | 11.975 | 11.976 | 11.981 | 11.976 | 11.976 | 11.981 |
| observation->Wspage->2000 | 11.256 | 11.256 | 11.260 | 11.256 | 11.256 | 11.260 |
| observation->Wspage->2001 | 12.179 | 12.181 | 12.201 | 12.181 | 12.181 | 12.201 |
| observation->Wspage->2002 | 9.731 | 9.732 | 9.745 | 9.732 | 9.732 | 9.745 |
| observation->Wspage->2003 | 9.555 | 9.555 | 9.556 | 9.555 | 9.555 | 9.556 |
| observation->Wspage->2004 | 14.340 | 14.342 | 14.304 | 14.342 | 14.342 | 14.304 |
| observation->Wspage->2005 | 14.932 | 14.934 | 14.977 | 14.934 | 14.934 | 14.977 |
| observation->Wspage->2006 | 13.817 | 13.817 | 13.872 | 13.817 | 13.817 | 13.872 |
| observation->Wspage->2007 | 11.498 | 11.500 | 11.516 | 11.500 | 11.500 | 11.516 |
| observation->Wspage->2008 | 12.195 | 12.196 | 12.194 | 12.196 | 12.196 | 12.194 |
| observation->Wspage->2009 | 12.631 | 12.635 | 12.594 | 12.635 | 12.635 | 12.594 |
| observation->Wspage->2010 | 11.316 | 11.317 | 11.299 | 11.317 | 11.317 | 11.299 |
| observation->Wspage->2011 | 11.154 | 11.155 | 11.137 | 11.155 | 11.155 | 11.137 |
| observation->Wspage->2012 | 11.867 | 11.866 | 11.860 | 11.866 | 11.866 | 11.860 |
| observation->Wspage->2013 | 11.041 | 11.043 | 11.065 | 11.043 | 11.043 | 11.065 |
| observation->Wspage->2014 | 12.944 | 12.944 | 12.941 | 12.944 | 12.944 | 12.941 |
| observation->Wspage->2015 | 13.134 | 13.136 | 13.101 | 13.136 | 13.136 | 13.101 |
| observation->Wspage->2016 | 14.272 | 14.268 | 14.273 | 14.268 | 14.268 | 14.273 |
| observation->Wspage->2017 | 13.745 | 13.746 | 13.797 | 13.746 | 13.746 | 13.797 |
| observation->EnspOLF->1992 | 4.397 | 4.396 | 4.388 | 4.396 | 4.396 | 4.388 |
| observation->EnspOLF->1994 | 6.647 | 6.645 | 6.678 | 6.645 | 6.645 | 6.678 |
| observation->EnspOLF->1996 | 7.897 | 7.899 | 7.906 | 7.899 | 7.899 | 7.906 |
| observation->EnspOLF->1998 | 5.301 | 5.301 | 5.303 | 5.301 | 5.301 | 5.303 |
| observation->Enspage->1999 | 14.332 | 14.331 | 14.287 | 14.331 | 14.331 | 14.287 |
| observation->Enspage->2000 | 13.975 | 13.973 | 13.960 | 13.973 | 13.973 | 13.960 |
| observation->Enspage->2001 | 13.979 | 13.959 | 13.929 | 13.959 | 13.959 | 13.929 |
| observation->Enspage->2002 | 12.081 | 12.087 | 12.078 | 12.087 | 12.087 | 12.078 |
| observation->Enspage->2003 | 9.700 | 9.702 | 9.706 | 9.702 | 9.702 | 9.706 |
| observation->Enspage->2004 | 12.966 | 12.972 | 12.986 | 12.972 | 12.972 | 12.986 |
| observation->Enspage->2005 | 11.012 | 11.009 | 11.009 | 11.009 | 11.009 | 11.009 |
| observation->Enspage->2006 | 12.741 | 12.744 | 12.712 | 12.744 | 12.744 | 12.712 |
| observation->Enspage->2007 | 11.061 | 11.060 | 11.052 | 11.060 | 11.060 | 11.052 |
| observation->Enspage->2008 | 12.104 | 12.100 | 12.101 | 12.100 | 12.100 | 12.101 |
| observation->Enspage->2009 | 10.056 | 10.055 | 10.055 | 10.055 | 10.055 | 10.055 |
| observation->Enspage->2010 | 17.581 | 17.576 | 17.627 | 17.576 | 17.576 | 17.627 |
| observation->Enspage->2011 | 13.399 | 13.402 | 13.412 | 13.402 | 13.402 | 13.412 |
| observation->Enspage->2012 | 13.149 | 13.148 | 13.134 | 13.148 | 13.148 | 13.134 |
| observation->Enspage->2013 | 16.694 | 16.691 | 16.659 | 16.691 | 16.691 | 16.659 |
| observation->Enspage->2014 | 13.869 | 13.868 | 13.870 | 13.868 | 13.868 | 13.870 |
| observation->Enspage->2015 | 12.760 | 12.764 | 12.776 | 12.764 | 12.764 | 12.776 |
| observation->Enspage->2016 | 19.224 | 19.222 | 19.203 | 19.222 | 19.222 | 19.203 |
| observation->Enspage->2017 | 15.562 | 15.552 | 15.511 | 15.552 | 15.552 | 15.511 |
| observation->WnspOLF->1992 | 10.122 | 10.124 | 10.129 | 10.124 | 10.124 | 10.129 |
| observation->WnspOLF->1993 | 9.045 | 9.047 | 8.991 | 9.047 | 9.047 | 8.991 |
| observation->WnspOLF->1994 | 15.930 | 15.931 | 15.893 | 15.931 | 15.931 | 15.893 |
| observation->WnspOLF->1996 | 9.788 | 9.784 | 9.752 | 9.784 | 9.784 | 9.752 |
| observation->WnspOLF->1999 | 11.553 | 11.553 | 11.593 | 11.553 | 11.553 | 11.593 |
| observation->WnspOLF->2000 | 13.812 | 13.817 | 13.892 | 13.817 | 13.817 | 13.892 |
| observation->Wnspage->2001 | 8.032 | 8.036 | 7.994 | 8.036 | 8.036 | 7.994 |
| observation->Wnspage->2002 | 8.715 | 8.714 | 8.701 | 8.714 | 8.714 | 8.701 |
| observation->Wnspage->2003 | 10.473 | 10.473 | 10.507 | 10.473 | 10.473 | 10.507 |
| observation->Wnspage->2004 | 7.155 | 7.154 | 7.140 | 7.154 | 7.154 | 7.140 |
| observation->Wnspage->2006 | 9.589 | 9.590 | 9.551 | 9.590 | 9.590 | 9.551 |
| observation->Wnspage->2007 | 10.861 | 10.860 | 10.822 | 10.860 | 10.860 | 10.822 |
| observation->Wnspage->2008 | 12.425 | 12.422 | 12.435 | 12.422 | 12.422 | 12.435 |
| observation->Wnspage->2009 | 14.716 | 14.719 | 14.790 | 14.719 | 14.719 | 14.790 |
| observation->Wnspage->2010 | 11.405 | 11.405 | 11.370 | 11.405 | 11.405 | 11.370 |
| observation->Wnspage->2011 | 11.267 | 11.265 | 11.275 | 11.265 | 11.265 | 11.275 |
| observation->Wnspage->2012 | 10.454 | 10.453 | 10.465 | 10.453 | 10.453 | 10.465 |
| observation->Wnspage->2013 | 13.633 | 13.634 | 13.634 | 13.634 | 13.634 | 13.634 |
| observation->Wnspage->2014 | 12.608 | 12.609 | 12.597 | 12.609 | 12.609 | 12.597 |
| observation->Wnspage->2016 | 15.687 | 15.683 | 15.722 | 15.683 | 15.683 | 15.722 |
| observation->CRsumage->1992 | 15.584 | 15.570 | 15.566 | 15.570 | 15.570 | 15.566 |
| observation->CRsumage->1993 | 10.616 | 10.613 | 10.624 | 10.613 | 10.613 | 10.624 |
| observation->CRsumage->1994 | 18.170 | 18.174 | 18.130 | 18.174 | 18.174 | 18.130 |
| observation->CRsumage->1995 | 14.285 | 14.287 | 14.242 | 14.287 | 14.287 | 14.242 |
| observation->CRsumage->1996 | 11.567 | 11.566 | 11.607 | 11.566 | 11.566 | 11.607 |
| observation->CRsumage->1997 | 15.754 | 15.750 | 15.688 | 15.750 | 15.750 | 15.688 |
| observation->CRsumage->1998 | 14.690 | 14.686 | 14.690 | 14.686 | 14.686 | 14.690 |
| observation->CRsumage->1999 | 12.061 | 12.061 | 12.084 | 12.061 | 12.061 | 12.084 |
| observation->CRsumage->2000 | 14.323 | 14.326 | 14.283 | 14.326 | 14.326 | 14.283 |
| observation->CRsumage->2001 | 19.659 | 19.651 | 19.520 | 19.651 | 19.651 | 19.520 |
| observation->CRsumage->2002 | 10.969 | 10.971 | 10.960 | 10.971 | 10.971 | 10.960 |
| observation->CRsumage->2003 | 11.251 | 11.254 | 11.210 | 11.254 | 11.254 | 11.210 |
| observation->CRsumage->2004 | 9.553 | 9.556 | 9.561 | 9.556 | 9.556 | 9.561 |
| observation->CRsumage->2005 | 12.753 | 12.749 | 12.654 | 12.749 | 12.749 | 12.654 |
| observation->CRsumage->2006 | 10.316 | 10.317 | 10.317 | 10.317 | 10.317 | 10.317 |
| observation->CRsumage->2007 | 13.562 | 13.561 | 13.504 | 13.561 | 13.561 | 13.504 |
| observation->CRsumage->2008 | 11.661 | 11.665 | 11.639 | 11.665 | 11.665 | 11.639 |
| observation->CRsumage->2009 | 12.006 | 12.002 | 11.965 | 12.002 | 12.002 | 11.965 |
| observation->CRsumage->2010 | 11.048 | 11.052 | 11.055 | 11.052 | 11.052 | 11.055 |
| observation->CRsumage->2011 | 12.579 | 12.577 | 12.571 | 12.577 | 12.577 | 12.571 |
| observation->CRsumage->2012 | 17.228 | 17.230 | 17.141 | 17.230 | 17.230 | 17.141 |
| observation->CRsumage->2013 | 11.843 | 11.845 | 11.822 | 11.845 | 11.845 | 11.822 |
| observation->CRsumage->2014 | 11.286 | 11.288 | 11.271 | 11.288 | 11.288 | 11.271 |
| observation->CRsumage->2016 | 9.866 | 9.867 | 9.847 | 9.867 | 9.867 | 9.847 |
| observation->CRsumage->2018 | 11.931 | 11.935 | 11.895 | 11.935 | 11.935 | 11.895 |
| observation->SAsumage->1992 | 12.246 | 12.241 | 12.269 | 12.241 | 12.241 | 12.269 |
| observation->SAsumage->1993 | 12.470 | 12.483 | 12.502 | 12.483 | 12.483 | 12.502 |
| observation->SAsumage->1994 | 10.811 | 10.808 | 10.818 | 10.808 | 10.808 | 10.818 |
| observation->SAsumage->2001 | 12.749 | 12.762 | 12.839 | 12.762 | 12.762 | 12.839 |
| observation->SAsumage->2002 | 12.209 | 12.216 | 12.254 | 12.216 | 12.216 | 12.254 |
| observation->SAsumage->2003 | 13.386 | 13.388 | 13.386 | 13.388 | 13.388 | 13.386 |
| observation->SAsumage->2004 | 11.067 | 11.064 | 11.005 | 11.064 | 11.064 | 11.005 |
| observation->SAsumage->2005 | 15.278 | 15.280 | 15.386 | 15.280 | 15.280 | 15.386 |
| observation->SAsumage->2006 | 14.112 | 14.110 | 14.078 | 14.110 | 14.110 | 14.078 |
| observation->SAsumage->2007 | 10.649 | 10.649 | 10.639 | 10.649 | 10.649 | 10.639 |
| observation->SAsumage->2008 | 13.771 | 13.766 | 13.836 | 13.766 | 13.766 | 13.836 |
| observation->SAsumage->2009 | 15.513 | 15.520 | 15.530 | 15.520 | 15.520 | 15.530 |
| observation->SAsumage->2010 | 15.081 | 15.082 | 15.130 | 15.082 | 15.082 | 15.130 |
| observation->SAsumage->2012 | 13.437 | 13.439 | 13.479 | 13.439 | 13.439 | 13.479 |
| observation->SAsumage->2013 | 11.954 | 11.956 | 11.982 | 11.956 | 11.956 | 11.982 |
| observation->SAsumage->2015 | 13.522 | 13.524 | 13.540 | 13.524 | 13.524 | 13.540 |
| observation->SAsumage->2017 | 12.492 | 12.487 | 12.478 | 12.487 | 12.487 | 12.478 |
| observation->SAautage->1992 | 11.809 | 11.819 | 11.857 | 11.819 | 11.819 | 11.857 |
| observation->SAautage->1996 | 10.449 | 10.450 | 10.426 | 10.450 | 10.450 | 10.426 |
| observation->SAautage->1998 | 12.809 | 12.810 | 12.835 | 12.810 | 12.810 | 12.835 |
| observation->pspawn_1993 | -6.017 | -6.016 | -6.015 | -6.016 | -6.016 | -6.015 |
| observation->pspawn->1992 | -4.848 | -4.852 | -4.829 | -4.852 | -4.852 | -4.829 |
| observation->pspawn->1998 | -8.284 | -8.291 | -8.300 | -8.291 | -8.291 | -8.300 |
| prior->CSacousq->catchability[CSacous].q | -0.849 | -0.847 | -0.839 | -0.847 | -0.847 | -0.839 |
| prior->WCacousq->catchability[WCacous].q | -1.162 | -1.163 | -1.202 | -1.163 | -1.163 | -1.202 |
| prior->CRsumq->catchability[CRsum].q | -2.155 | -2.153 | -2.207 | -2.153 | -2.153 | -2.207 |
| prior->SAsumq->catchability[SAsum].q | -1.762 | -1.760 | -1.557 | -1.760 | -1.760 | -1.557 |
| prior->SAautq->catchability[SAaut].q | -1.913 | -1.911 | -1.762 | -1.911 | -1.911 | -1.762 |
| prior->CR_process_error->observation[CRsumbio].process_error | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SA_process_error->observation[SAsumbio].process_error | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->B0_E_with_total_log_b0_prior->parameter_transformation[log_sum_b0].log_total_parameter | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->B0_W_with_proportion_prior->parameter_transformation[log_sum_b0].total_proportion_parameter | 12.544 | 12.545 | 12.555 | 12.545 | 12.545 | 12.555 |
| prior->M_all->process[Instant_mortality].m{west.sa} | -1.085 | -1.083 | -1.217 | -1.083 | -1.083 | -1.217 |
| prior->Wspsl_shift_param->time_varying[shifted_mu].a | 0.420 | 0.422 | 0.378 | 0.422 | 0.422 | 0.378 |
| prior->YCS_E->process[recruit_E].ycs_values{1975} | -0.624 | -0.624 | -0.623 | -0.624 | -0.624 | -0.623 |
| prior->YCS_E->process[recruit_E].ycs_values{1976} | -0.316 | -0.314 | -0.319 | -0.314 | -0.314 | -0.319 |
| prior->YCS_E->process[recruit_E].ycs_values{1977} | -0.227 | -0.225 | -0.238 | -0.225 | -0.225 | -0.238 |
| prior->YCS_E->process[recruit_E].ycs_values{1978} | 0.654 | 0.656 | 0.615 | 0.656 | 0.656 | 0.615 |
| prior->YCS_E->process[recruit_E].ycs_values{1979} | 0.084 | 0.086 | 0.062 | 0.086 | 0.086 | 0.062 |
| prior->YCS_E->process[recruit_E].ycs_values{1980} | -0.630 | -0.630 | -0.627 | -0.630 | -0.630 | -0.627 |
| prior->YCS_E->process[recruit_E].ycs_values{1981} | -0.619 | -0.619 | -0.623 | -0.619 | -0.619 | -0.623 |
| prior->YCS_E->process[recruit_E].ycs_values{1982} | -0.550 | -0.551 | -0.542 | -0.551 | -0.551 | -0.542 |
| prior->YCS_E->process[recruit_E].ycs_values{1983} | -0.627 | -0.627 | -0.630 | -0.627 | -0.627 | -0.630 |
| prior->YCS_E->process[recruit_E].ycs_values{1984} | -0.591 | -0.591 | -0.596 | -0.591 | -0.591 | -0.596 |
| prior->YCS_E->process[recruit_E].ycs_values{1985} | -0.641 | -0.641 | -0.642 | -0.641 | -0.641 | -0.642 |
| prior->YCS_E->process[recruit_E].ycs_values{1986} | -0.408 | -0.408 | -0.400 | -0.408 | -0.408 | -0.400 |
| prior->YCS_E->process[recruit_E].ycs_values{1987} | 0.142 | 0.142 | 0.135 | 0.142 | 0.142 | 0.135 |
| prior->YCS_E->process[recruit_E].ycs_values{1988} | 0.026 | 0.025 | 0.019 | 0.025 | 0.025 | 0.019 |
| prior->YCS_E->process[recruit_E].ycs_values{1989} | -0.631 | -0.631 | -0.632 | -0.631 | -0.631 | -0.632 |
| prior->YCS_E->process[recruit_E].ycs_values{1990} | 0.159 | 0.159 | 0.158 | 0.159 | 0.159 | 0.158 |
| prior->YCS_E->process[recruit_E].ycs_values{1991} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{1992} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{1993} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{1994} | -0.530 | -0.531 | -0.525 | -0.531 | -0.531 | -0.525 |
| prior->YCS_E->process[recruit_E].ycs_values{1995} | -0.534 | -0.534 | -0.538 | -0.534 | -0.534 | -0.538 |
| prior->YCS_E->process[recruit_E].ycs_values{1996} | -0.574 | -0.573 | -0.577 | -0.573 | -0.573 | -0.577 |
| prior->YCS_E->process[recruit_E].ycs_values{1997} | -0.623 | -0.623 | -0.622 | -0.623 | -0.623 | -0.622 |
| prior->YCS_E->process[recruit_E].ycs_values{1998} | -0.512 | -0.511 | -0.513 | -0.511 | -0.511 | -0.513 |
| prior->YCS_E->process[recruit_E].ycs_values{1999} | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 |
| prior->YCS_E->process[recruit_E].ycs_values{2000} | -0.616 | -0.616 | -0.614 | -0.616 | -0.616 | -0.614 |
| prior->YCS_E->process[recruit_E].ycs_values{2001} | -0.065 | -0.065 | -0.071 | -0.065 | -0.065 | -0.071 |
| prior->YCS_E->process[recruit_E].ycs_values{2002} | -0.543 | -0.542 | -0.545 | -0.542 | -0.542 | -0.545 |
| prior->YCS_E->process[recruit_E].ycs_values{2003} | -0.586 | -0.586 | -0.585 | -0.586 | -0.586 | -0.585 |
| prior->YCS_E->process[recruit_E].ycs_values{2004} | -0.568 | -0.568 | -0.568 | -0.568 | -0.568 | -0.568 |
| prior->YCS_E->process[recruit_E].ycs_values{2005} | -0.579 | -0.579 | -0.578 | -0.579 | -0.579 | -0.578 |
| prior->YCS_E->process[recruit_E].ycs_values{2006} | -0.483 | -0.483 | -0.482 | -0.483 | -0.483 | -0.482 |
| prior->YCS_E->process[recruit_E].ycs_values{2007} | -0.567 | -0.567 | -0.566 | -0.567 | -0.567 | -0.566 |
| prior->YCS_E->process[recruit_E].ycs_values{2008} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{2009} | -0.561 | -0.561 | -0.562 | -0.561 | -0.561 | -0.562 |
| prior->YCS_E->process[recruit_E].ycs_values{2010} | -0.031 | -0.031 | -0.046 | -0.031 | -0.031 | -0.046 |
| prior->YCS_E->process[recruit_E].ycs_values{2011} | -0.408 | -0.408 | -0.408 | -0.408 | -0.408 | -0.408 |
| prior->YCS_E->process[recruit_E].ycs_values{2012} | -0.019 | -0.019 | -0.023 | -0.019 | -0.019 | -0.023 |
| prior->YCS_E->process[recruit_E].ycs_values{2013} | -0.238 | -0.238 | -0.242 | -0.238 | -0.238 | -0.242 |
| prior->YCS_E->process[recruit_E].ycs_values{2014} | -0.317 | -0.317 | -0.314 | -0.317 | -0.317 | -0.314 |
| prior->YCS_E->process[recruit_E].ycs_values{2015} | -0.279 | -0.284 | -0.302 | -0.284 | -0.284 | -0.302 |
| prior->YCS_E->process[recruit_E].ycs_values{2016} | 0.363 | 0.364 | 0.373 | 0.364 | 0.364 | 0.373 |
| prior->YCS_W->process[recruit_W].ycs_values{1975} | -0.616 | -0.616 | -0.617 | -0.616 | -0.616 | -0.617 |
| prior->YCS_W->process[recruit_W].ycs_values{1976} | -0.195 | -0.195 | -0.184 | -0.195 | -0.195 | -0.184 |
| prior->YCS_W->process[recruit_W].ycs_values{1977} | -0.376 | -0.376 | -0.396 | -0.376 | -0.376 | -0.396 |
| prior->YCS_W->process[recruit_W].ycs_values{1978} | -0.396 | -0.397 | -0.417 | -0.397 | -0.397 | -0.417 |
| prior->YCS_W->process[recruit_W].ycs_values{1979} | -0.607 | -0.607 | -0.612 | -0.607 | -0.607 | -0.612 |
| prior->YCS_W->process[recruit_W].ycs_values{1980} | -0.567 | -0.568 | -0.573 | -0.568 | -0.568 | -0.573 |
| prior->YCS_W->process[recruit_W].ycs_values{1981} | -0.502 | -0.502 | -0.508 | -0.502 | -0.502 | -0.508 |
| prior->YCS_W->process[recruit_W].ycs_values{1982} | -0.606 | -0.606 | -0.607 | -0.606 | -0.606 | -0.607 |
| prior->YCS_W->process[recruit_W].ycs_values{1983} | -0.109 | -0.108 | -0.111 | -0.108 | -0.108 | -0.111 |
| prior->YCS_W->process[recruit_W].ycs_values{1984} | -0.163 | -0.161 | -0.163 | -0.161 | -0.161 | -0.163 |
| prior->YCS_W->process[recruit_W].ycs_values{1985} | -0.619 | -0.619 | -0.620 | -0.619 | -0.619 | -0.620 |
| prior->YCS_W->process[recruit_W].ycs_values{1986} | -0.098 | -0.097 | -0.098 | -0.097 | -0.097 | -0.098 |
| prior->YCS_W->process[recruit_W].ycs_values{1987} | 0.788 | 0.789 | 0.782 | 0.789 | 0.789 | 0.782 |
| prior->YCS_W->process[recruit_W].ycs_values{1988} | -0.252 | -0.251 | -0.255 | -0.251 | -0.251 | -0.255 |
| prior->YCS_W->process[recruit_W].ycs_values{1989} | 1.207 | 1.207 | 1.211 | 1.207 | 1.207 | 1.211 |
| prior->YCS_W->process[recruit_W].ycs_values{1990} | 1.197 | 1.198 | 1.204 | 1.198 | 1.198 | 1.204 |
| prior->YCS_W->process[recruit_W].ycs_values{1991} | -0.081 | -0.081 | -0.080 | -0.081 | -0.081 | -0.080 |
| prior->YCS_W->process[recruit_W].ycs_values{1992} | 0.480 | 0.480 | 0.480 | 0.480 | 0.480 | 0.480 |
| prior->YCS_W->process[recruit_W].ycs_values{1993} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_W->process[recruit_W].ycs_values{1994} | 0.014 | 0.014 | 0.020 | 0.014 | 0.014 | 0.020 |
| prior->YCS_W->process[recruit_W].ycs_values{1995} | -0.410 | -0.409 | -0.413 | -0.409 | -0.409 | -0.413 |
| prior->YCS_W->process[recruit_W].ycs_values{1996} | -0.301 | -0.301 | -0.306 | -0.301 | -0.301 | -0.306 |
| prior->YCS_W->process[recruit_W].ycs_values{1997} | -0.466 | -0.467 | -0.471 | -0.467 | -0.467 | -0.471 |
| prior->YCS_W->process[recruit_W].ycs_values{1998} | -0.322 | -0.323 | -0.334 | -0.323 | -0.323 | -0.334 |
| prior->YCS_W->process[recruit_W].ycs_values{1999} | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 |
| prior->YCS_W->process[recruit_W].ycs_values{2000} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_W->process[recruit_W].ycs_values{2001} | 0.856 | 0.855 | 0.846 | 0.855 | 0.855 | 0.846 |
| prior->YCS_W->process[recruit_W].ycs_values{2002} | -0.222 | -0.222 | -0.222 | -0.222 | -0.222 | -0.222 |
| prior->YCS_W->process[recruit_W].ycs_values{2003} | -0.612 | -0.612 | -0.612 | -0.612 | -0.612 | -0.612 |
| prior->YCS_W->process[recruit_W].ycs_values{2004} | -0.570 | -0.570 | -0.571 | -0.570 | -0.570 | -0.571 |
| prior->YCS_W->process[recruit_W].ycs_values{2005} | -0.574 | -0.574 | -0.576 | -0.574 | -0.574 | -0.576 |
| prior->YCS_W->process[recruit_W].ycs_values{2006} | -0.280 | -0.280 | -0.279 | -0.280 | -0.280 | -0.279 |
| prior->YCS_W->process[recruit_W].ycs_values{2007} | -0.438 | -0.438 | -0.436 | -0.438 | -0.438 | -0.436 |
| prior->YCS_W->process[recruit_W].ycs_values{2008} | -0.464 | -0.464 | -0.463 | -0.464 | -0.464 | -0.463 |
| prior->YCS_W->process[recruit_W].ycs_values{2009} | -0.514 | -0.514 | -0.508 | -0.514 | -0.514 | -0.508 |
| prior->YCS_W->process[recruit_W].ycs_values{2010} | 0.071 | 0.070 | 0.078 | 0.070 | 0.070 | 0.078 |
| prior->YCS_W->process[recruit_W].ycs_values{2011} | 0.031 | 0.030 | 0.043 | 0.030 | 0.030 | 0.043 |
| prior->YCS_W->process[recruit_W].ycs_values{2012} | -0.050 | -0.049 | -0.059 | -0.049 | -0.049 | -0.059 |
| prior->YCS_W->process[recruit_W].ycs_values{2013} | -0.489 | -0.488 | -0.490 | -0.488 | -0.488 | -0.490 |
| prior->YCS_W->process[recruit_W].ycs_values{2014} | 1.730 | 1.727 | 1.742 | 1.727 | 1.727 | 1.742 |
| prior->YCS_W->process[recruit_W].ycs_values{2015} | 1.681 | 1.684 | 1.687 | 1.684 | 1.684 | 1.687 |
| prior->YCS_W->process[recruit_W].ycs_values{2016} | 0.363 | 0.364 | 0.373 | 0.364 | 0.364 | 0.373 |
| prior->sel_Whome->selectivity[sel_Whome].v{1} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{2} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{3} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{4} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{5} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{6} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{7} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{1} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{2} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{3} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{4} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{5} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{6} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{7} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{8} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{1} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{2} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{3} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{4} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{5} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{6} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{7} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{8} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Enspsl_mu->selectivity[Enspsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Enspsl_s_l->selectivity[Enspsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Enspsl_s_r->selectivity[Enspsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Wnspsl_mu->selectivity[Wnspsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Wnspsl_s_l->selectivity[Wnspsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Wnspsl_s_r->selectivity[Wnspsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Espsl_mu->selectivity[Espsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Espsl_s_l->selectivity[Espsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Espsl_s_r->selectivity[Espsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->CRsl_mu->selectivity[CRsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->CRsl_s_l->selectivity[CRsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->CRsl_s_r->selectivity[CRsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SAsl_mu->selectivity[SAsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SAsl_s_l->selectivity[SAsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SAsl_s_r->selectivity[SAsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| additional_prior->YCS.eq.16 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| additional_prior->sp.migr | 0.009 | 0.009 | 0.013 | 0.009 | 0.009 | 0.013 |
| jacobian->log_sum_b0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| total_score | 1946.810 | 1946.800 | 1946.540 | 1946.800 | 1946.800 | 1946.540 |
## [1] "CASAL base model convergence information"
## [1] "fmm: have converged: t = 8.24015e-007 f = 1946.54"
## [2] "Successful convergence in optimise"
## [3] "Minimiser achieved convergence after 599 quasi-Newton iterations using 669 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"
## [3] "Minimiser achieved convergence after 665 quasi-Newton iterations using 765 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 3.77312e-07 f = 1946.81"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 6.97859e-07 f = 1946.8"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## [1] "[IMPORTANT] FMM: Small step size convergence"
## [2] "FMM: Small step size convergence"
## [1] "CASAL model warnings"
## parameter estimate lower.bound upper.bound
## 1 recruitment[E].YCS[25] 0.06 0.06 8.6
## 2 recruitment[W].YCS[25] 0.06 0.06 8.6
## 3 selectivity[CRsl].all[1] 1 1 17
## 4 selectivity[CRsl].all[2] 1 1 50
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
## parameter estimate lower.bound upper.bound
## 1 recruitment[E].YCS[25] 0.06 0.06 8.6
## 2 recruitment[W].YCS[25] 0.06 0.06 8.6
## 3 selectivity[CRsl].all[1] 1 1 17
## 4 selectivity[CRsl].all[2] 1 1 50
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"
## [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"
## [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"
## [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"
## [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"
## [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"
## [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"
## [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## [81] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [82] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [83] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## [84] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [85] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [87] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [88] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [89] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [90] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## [91] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [92] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [93] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [94] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"
## [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"
## [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"
## [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"
## [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"
## [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"
## [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"
## [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## [81] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [82] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [83] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [84] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [85] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [86] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [87] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [88] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [89] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [90] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [91] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [92] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"
## [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"
## [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"
## [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"
## [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"
## [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"
## [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"
## [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## [81] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [82] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [83] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [84] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [85] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"
## [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"
## [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"
## [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"
## [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"
## [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"
## [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"
## [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## [81] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [82] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [83] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [84] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [85] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [86] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [87] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [88] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [89] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [90] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [91] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [92] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"
## [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"
## [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"
## [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"
## [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"
## [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"
## [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"
## [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## [81] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [82] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [83] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [84] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [85] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [86] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [87] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [88] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [89] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## [90] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## [91] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [92] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"
## [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"
## [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"
## [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"
## [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"
## [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"
## [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"
## [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## [81] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [82] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [83] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## [84] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [85] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
Time series comparisons with CASAL base model results
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
Derived quantities
SB0, SBcurrent, MSY, F_MSY, others...
Comparison plots
## [1] "CASAL base parameter correlation range (excluding 1.0): -0.9914 0.9969"
## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.9324 0.9968"
## Warning in min(x): no non-missing arguments to min; returning Inf
## Warning in max(x): no non-missing arguments to max; returning -Inf
## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): Inf -Inf"
## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.960603 0.996694"
## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.933892 0.996693"
## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.886814 0.999462"
## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.889925 0.996766"
## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.925247 0.996779"